Publications-Lane Center for Computational Cancer Research - Carnegie Mellon University

Publications

Ruffalo M and Bar-Joseph Z.(2016) Genome-wide predictions of miRNA regulation by transcription factorsBioinformatics (Proceedings of the 15th European Conference on Computational Biology, ECCB), in press.

A. Kumar, A. Rao,  s. Bhavani  J.Y. Newberg, and R. F. Murphy  (2014) Automated  Analysis of Immunohistochemical Images Identifies Candidate Location Biomarkers for Cancers. Proc. Natl. Acad.
Sci. U.S.A., 111:18249-18254.

Parikh AP, Curtis RE, Kuhn I, Beeker-Weimann S, Bissell M, et al. (2014) Network  Analysis of  Breast Cancer Progression and Reversal Using a Tree-Evolving Network Algorithm. PLoS Comput Bioi 10(7):
e1003713.

B.M. Nolen,  C.J. Langmead, S, Choi, A. Lomakin, A. Marrangoni, W. L. Bigbee, J. L. Weissfeld, D. O. Wilson, S. Dacic, J. M. Siegfried, and A. E. Lokshin (2012) Serum Biomarker Profiles as Screening Tools in Lung Cancer. Cancer Biomarkers 10(1) pp. 3-12.

A.K. Ghosh, S. K. Jha,   C.J. Langmead, S. Jha, E. Sassano (2012) Decision Procedure Based Discovery of Rare Behaviors in SDE Models of Biological Systems: Applications to Minimal Cell Cycle Model. Proceedings of the 2nd Intl Conference on Bio and Medical Sciences (ICCABS).

R. E. Brand, C.J. Langmead, B. M. Nolen, H. J. Zeh, P. J. Allen, M. A. Eloubeidi, M. Goldberg, E. Elton, J. P. Arnoletti,  J. D. Christein, S. M. Vickers, D. P. Landsittel, D. C. Whitcomb, W. E. Grizzle, and A. E. Lokshin (2011) Serum Biomarker Panels for the Detection of Pancreatic Cancer. Clinical Cancer Research 17*(4):805-816.

E. Glory, J . Newberg, and R.F. Murphy  (2008). Automated Comparison Of Protein Subcellular Location Patterns Between Images  Of Normal And Cancerous Tissues. Proceedings of the 2008 IEEE
International Symposium on BiomedicalImaging (ISBI2008), pp. 304-307